Latest Publications

Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers

Authors: Hippolyte, I.; Jenny, C.; Gardes, L.; Bakry, F.; Rivallan, R.; Pomies, V.; Cubry, P.; Tomekpe, K.; Risterucci, A.M.; Roux, N.; Rouard, M.; Arnaud, E.; Kolesnikova-Allen, M.; Perrier, X.

The production of triploid banana and plantain (Musa spp.) cultivars with improved characteristics (e.g. greater disease resistance or higher yield), while still preserving the main features of current popular cultivars (e.g. taste and cooking quality), remains a major challenge for Musa breeders. In this regard, breeders require a sound knowledge of the lineage of the current sterile triploid cultivars, to select diploid parents that are able to transmit desirable traits,...

Chado controller: advanced annotation management with a community annotation system

Authors: Guignon, V.; Droc, G.; Alaux, M.; Baurens, F.C.; Garsmeur, O.; Poiron, C.; Carver, T.; Rouard, M.; Bocs, S.

We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl.

Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa

Authors: Podevin, N.; Krauss, A.; Henry, I.; Swennen, R.; Remy, S.

Gene expression analysis by reverse transcriptase real-time or quantitative polymerase chain reaction (RT-qPCR) is becoming widely used for nonmodel plant species. Given the high sensitivity of this method, normalization using multiple housekeeping or reference genes is critical, and careful selection of these reference genes is one of the most important steps to obtain reliable results. In this study, reference genes commonly used for other plant species were investigated to identify genes...

Expression of a rice chitinase gene in transgenic banana (''Gros Michel'', AAA genome group) confers resistance to black leaf streak disease

Authors: Kovacs, G.; Sagi, L.; Jacon, G.; Arinaitwe, G.; Busogoro, J.P.; Thiry, E.; Strosse, H.; Swennen, R.; Remy, S.

Transgenic banana (Musa acuminata 'Gros Michel') integrating either of two rice chitinase genes was generated and its resistance to Black Leaf Streak disease caused by the fungus Mycosphaerella fijiensis was tested using a leaf disk bioassay. PCR screening indicated the presence of the hpt selectable marker gene in more than 90 % of the lines tested, whereas more than three quarters of the lines contained the linked rice chitinase gene resulting in a...

How effective are DNA barcodes in the identification of African rainforest trees?

Authors: Parmentier, I.; Duminil, J.; Kuzmina, M.; Philippe, M.; Thomas, D.W.; Kenfack, D.; Chuyong, G.B.; Cruaud, C.; Hardy, H.J.

Barcoding is a useful tool to assign unidentified African rain forest trees to a genus, but identification to a species is less reliable, especially in species-rich clades, even using an exhaustive local database. Combining two markers improves the accuracy of species identification but it would only marginally improve genus identification. Finally, the authors highlight some limitations of the BLAST algorithm as currently implemented and suggest possible improvements for barcoding...

Comparisons of protein profiles of beech bark disease resistant and susceptible American beech (Fagus grandifolia)

Authors: Masonm, M.E.; Koch, J.L.; Krasowski, M.; Loo, J.

Beech bark disease is an insect-fungus complex that damages and often kills American beech trees and has major ecological and economic impacts on forests of the northeastern United States and southeastern Canadian forests. The disease begins when exotic beech scale insects feed on the bark of trees, and is followed by infection of damaged bark tissues by one of the Neonectria species of fungi. Proteomic analysis was conducted of beech bark proteins from diseased trees and healthy...

Ethnobotanical factors influencing the use and management of wild edible plants of agricultural environments in Benin

Authors: Avohou, H.T; Vodouhe, R.S.; Dansi, A.; Kpeki, B.; Bellon, M.

This study investigates how the socioeconomic status of locals interacts with the cultural, botanical, and economic features of wild edible plants to shape the floristic richness and management options of these resources. We interviewed husbands and their wives in 60 households from three ethnic groups in central Benin. We found that ethnicity affected the composition of managed species at community level. Within communities, the richness and composition of species managed by households were...

Bioversity International - Research for our future

Bioversity International is a research-for-development organization seeking solutions to global issues through the use and conservation of agricultural and forest biodiversity.
Bioversity International’s purpose is to investigate the use and conservation of agricultural and forest biodiversity in order to achieve better nutrition, improve livelihoods, enhance agricultural and forest sustainability and enable productive and  resilient ecosystems.

Selection of provenances to adapt tropical pine forestry to climate change on the basis of climate analogs

Authors: Leibing, C.; Signer, J.; van Zonneveld, M.; Jarvis, A.; Dvorak, W.

Pinus patula and Pinus tecunumanii play an important role in the forestry sector in the tropics and subtropics and, in recent decades, members of the International Tree Breeding and Conservation Program (Camcore) at North Carolina State University have established large, multi-site provenance trials for these pine species. The data collected...

Agromorphological characterization of Sesamum radiatum (Schum. and Thonn.), a neglected and underutilized species of traditional leafy vegetable of great importance in Benin

Authors: Adeoti, K.; Dansi, A.; Ahoton, L.; Vodouhe, R.; Ahohuendo, B.C.; Rival, A.; Sanni, A.

Sesamum radiatum (Schum. and Thonn) is a traditional leafy vegetable of national importance in Benin. Although, it is cultivated and consumed in many regions of the country, it is still unfortunately neglected by scientific research. In order to fill in the knowledge gaps necessary for its varietal improvement, 16 accessions collected from different agro-ecological zones were characterized using 16 quantitative morphological traits. A significant variability was found among the...